PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143830.1
Common NameCsa_5G223070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 283aa    MW: 31598.8 Da    PI: 5.9248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.45.8e-23121183259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT..EEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk..vveitYegeHnhe 59 
                     +D y WrKYGqK ++++++prsYYrCt++   gC+++k+v+r + d +  + +itY ++H+++
  Cucsa.143830.1 121 EDNYGWRKYGQKAIHNTTYPRSYYRCTHKfdqGCQATKQVQRMEGDDSeiMYNITYISDHTCR 183
                     7***************************9999**********99776534679*******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24106185IPR003657WRKY domain
PROSITE profilePS5081118.601115183IPR003657WRKY domain
SuperFamilySSF1182902.22E-22115185IPR003657WRKY domain
SMARTSM007743.1E-30120184IPR003657WRKY domain
PfamPF031069.8E-23121183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDAPEFSHGR ISPAELRRKI TAKLLPGQDS AAHLRILLQS ATATEQDKRA LATKILTSIT  60
EAISILESAG EELSCPDHSL CSDLDSGESR RSRAVKDNPS RANKRRRSMN SRSVRTSRTT  120
EDNYGWRKYG QKAIHNTTYP RSYYRCTHKF DQGCQATKQV QRMEGDDSEI MYNITYISDH  180
TCRRPASPID ASAITTLSDS SNLISFSSID CNGPFTEGTG YSLISWRPSD DDVVKIGETA  240
TTSGSTDDHE IDLWSDLKDF LELPNNGYDN DNEESILFLN RR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840280.0GU984028.1 Cucumis sativus WRKY protein (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267638.10.0probable WRKY transcription factor 54-like
TrEMBLA0A0A0KMB30.0A0A0A0KMB3_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2455633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-31WRKY DNA-binding protein 54
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]